Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	pipeline-pe.cwl ATAC-seq pipeline - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-pe.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	pipeline-se-blacklist-removal.cwl ATAC-seq pipeline - reads: SE - with blacklist removal	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	validate_interleaved_fq.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: eed00bbabeae73ef7f00712da17861eade3b9057
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	extract_readgroups_bam_http.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
	integrity.cwl	https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git Path: workflows/mirnaseq_automation/integrity.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416