Explore Workflows
View already parsed workflows here or click here to add your own
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topmed-alignment.cwl
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![]() Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: 6478d5df50d7340311d18f03a056e3db97811269 |
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gatk4W-spark.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
![]() Path: gatk4W-spark.cwl Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7 |
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process VCF workflow
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![]() Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
![]() Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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WGS QC workflow mouse
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![]() Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416 |
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Hello World
Outputs a message using echo |
![]() Path: workflows/workflows/hello/hello-param.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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Detect Variants workflow
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![]() Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7 |
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HS Metrics workflow
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![]() Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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metrics.cwl
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![]() Path: workflows/mirnaseq_automation/metrics.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3 |
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readgroups_bam_to_readgroups_fastq_lists.cwl
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![]() Path: workflows/mirnaseq_automation/readgroups_bam_to_readgroups_fastq_lists.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3 |