Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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heatmap.cwl
Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension |
https://github.com/Barski-lab/workflows.git
Path: workflows/heatmap.cwl Branch/Commit ID: bc75349ad3a7bdce82b4cd8584501f4d0280bb8d |
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wf_run_use_case.cwl
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https://github.com/BAMresearch/NFDI4IngScientificWorkflowRequirements.git
Path: simple_use_case/cwl/wf_run_use_case.cwl Branch/Commit ID: 4f2c58bfa7274b9486a620abbaf67d593d47e716 |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: d39017c63dd8e088f1ad3809d709529df602e05f |
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CLE gold vcf evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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main-wes_chr21_test.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-arvados/main-wes_chr21_test.cwl Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac |
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tmb_workflow.cwl
Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb_workflow.cwl Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4 |
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tt_kmer_compare_wnode
Pairwise comparison |
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 94c97cfc95a5bf102a6f9206e045ea1afb768317 |
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Chipseq alignment with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: e3f18c61d1bbf65e40921dbd044369da4523ee3e |