Explore Workflows
View already parsed workflows here or click here to add your own
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gcaccess_from_list
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![]() Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: dev |
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make_search_pair_workflow.cwl
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![]() Path: make_search_pair_workflow.cwl Branch/Commit ID: master |
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Metagenomics workflow
Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (quality trimming) - kraken2 (taxonomy) - bbmap contamination filter - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - Contig binning (OPTIONAL) |
![]() Path: cwl/workflows/workflow_metagenomics_assembly.cwl Branch/Commit ID: master |
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env-wf2.cwl
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![]() Path: tests/env-wf2.cwl Branch/Commit ID: main |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
![]() Path: workflows/rna-selector.cwl Branch/Commit ID: ca6ca613 |
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echo-workflow.cwl
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![]() Path: _includes/cwl/echo-workflow.cwl Branch/Commit ID: gh-pages |
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WGS QC workflow nonhuman
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![]() Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: low-vaf |
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gk-parse-current.cwl
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![]() Path: cwl/gk-parse-current.cwl Branch/Commit ID: master |
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pindel parallel workflow
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![]() Path: pindel/workflow.cwl Branch/Commit ID: master |
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batch-preprocess-ont.cwl
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![]() Path: PreProcessing/batch-preprocess-ont.cwl Branch/Commit ID: master |