Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Alignment without BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	kfdrc_cram_reheader_wf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: workflows/kfdrc_cram_reheader_wf.cwl Branch/Commit ID: edd5a6b2df3b4d0503e09fb17f5f1ef278594af3
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/revsort.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: varscan/bgzip_and_index.cwl Branch/Commit ID: 202b43b7449485a317c857d62ca7d39196764e65