Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Create Genomic Collection for Bacterial Pipeline
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49 |
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pipeline-pe-blacklist-removal.cwl
ATAC-seq pipeline - reads: PE - with blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl Branch/Commit ID: 487af88ef0b971f76ecd1a215639bb47e3ee94e1 |
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Filter Protein Seeds; Find ProSplign Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49 |
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Apply filters to VCF file
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5 |
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default-dir5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-dir5.cwl Branch/Commit ID: 2710cfe731374cf7244116dd7186fc2b6e4af344 |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 2d54b11cc9891c9aa52515fe4f8cd9cba12c6629 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 2d54b11cc9891c9aa52515fe4f8cd9cba12c6629 |
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03-quantification.cwl
DNase-seq 03 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/DNase-seq_pipeline/03-quantification.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134 |
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tt_kmer_compare_wnode
Pairwise comparison |
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785 |
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Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6 |