Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Seurat Cluster
Seurat Cluster ============== Runs filtering, integration, and clustering analyses for Cell Ranger Count Gene Expression or Cell Ranger Aggregate experiments. |
![]() Path: workflows/seurat-cluster.cwl Branch/Commit ID: c6bfa0de917efb536dd385624fc7702e6748e61d |
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Unaligned BAM to BQSR and VCF
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![]() Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
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cluster_blastp_wnode and gpx_qdump combined
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![]() Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 1e7aa9f0c34987ddafa35f9b1d2c77d99fafbdab |
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Alignment without BQSR
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![]() Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
![]() Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
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gathered exome alignment and somatic variant detection for cle purpose
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![]() Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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split_bam_subpipeline.cwl
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![]() Path: janis_pipelines/wgs_somatic/cwl/tools/split_bam_subpipeline.cwl Branch/Commit ID: c287ec74267425b1e70ee1f64b6219806c81779b |
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extract_gencoll_ids
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![]() Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: b560e3abadfb150a0013376d7a189df066ab56f9 |
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scatter-valuefrom-wf3.cwl#main
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![]() Path: tests/scatter-valuefrom-wf3.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df Packed ID: main |
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cache_asnb_entries
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![]() Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288 |