Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph echo-wc_inline.cwl

Counts words of a message via echo and wc

 https://github.com/NLeSC/scriptcwl.git

Path: tests/data/workflows/echo-wc_inline.cwl

Branch/Commit ID: master
workflow graph Single-cell Multiome ATAC and RNA-Seq Aggregate

Single-cell Multiome ATAC and RNA-Seq Aggregate Aggregates data from multiple Single-cell Multiome ATAC and RNA-Seq Alignment experiments

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-aggregate-wf.cwl

Branch/Commit ID: main
workflow graph 01-qc-pe.cwl

RNA-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: master
workflow graph qiime2 demux paired sequences

https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-02-demux-emp-paired.cwl

Branch/Commit ID: develop
workflow graph host_process.cwl

https://github.com/azzaea/tsts.git

Path: cwl/host_process.cwl

Branch/Commit ID: master
workflow graph hisat2_index.cwl

https://github.com/rawgene/cwl.git

Path: workflows/hisat2_index.cwl

Branch/Commit ID: master
workflow graph cram_to_bam workflow

https://github.com/MarkRobbo/workflows.git

Path: workflows/hello/exome_alignment_packed.cwl

Branch/Commit ID: master

Packed ID: workflow.cwl
workflow graph GATK-Sub-Workflow-h3abionet-snp.cwl

https://github.com/h3abionet/h3agatk.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl

Branch/Commit ID: 1.0.1
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 1550b3e
workflow graph Exome QC workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl

Branch/Commit ID: low-vaf