Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_filter_vcf.cwl

Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
workflow graph qiime2 rarefaction visualization

Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-07-alpha-rarefaction.cwl

Branch/Commit ID: a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c
workflow graph Filter single sample sv vcf from depth callers(cnvkit/cnvnator)

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sv_depth_caller_filter.cwl

Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter-wf4.cwl

Branch/Commit ID: 65aedc5e7e1f3ccace7f9022f8a54b3f0d5c9a8c

Packed ID: main
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
workflow graph tt_univec_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
workflow graph kf-cram2gvcf-custom.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kf-cram2gvcf-custom.cwl

Branch/Commit ID: c8255e2aab840f671d9f142d74f915c76415ff51
workflow graph CRAM_md5sum_checker_wrapper.cwl

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/toolbox.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: 540471878f913d672103e277180e3028c16a3027
workflow graph preprocess.cwl

https://github.com/epigenomics-screw/screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: 84cc7c986b15a4f46f67a6b4a2b2b8a7faa31bdb