Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	Detect Variants workflow for WGS pipeline	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97