Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 551493f5c24b757a46cd22821a05e6ac6dcceb7f |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE - blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f |
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extract_capture_kit_http.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_capture_kit_http.cwl Branch/Commit ID: b110a23e2efaaadfd4feca4f9e130946d1c5418d |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da |
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default-dir5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-dir5.cwl Branch/Commit ID: 9f3b9e7b74d5a904b12674dfd1300b56a48c3d33 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |