Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	CLE gold vcf evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 7b5130d2408bce82ee15c666b37d931ef6f452e3
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611
	pass-unconnected.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/pass-unconnected.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca