Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Per-chromosome pindel

https://github.com/genome/cancer-genomics-workflow.git

Path: pindel/pindel_cat.cwl

Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: c162a19d83f872fe0dc0077e18bef22c99423e4d
workflow graph emblem_textures.cwl

https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: textures/emblem_textures.cwl

Branch/Commit ID: 75220fd16cb31b7424b554489cca7921777be4f3
workflow graph GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl

https://github.com/h3abionet/h3agatk.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl

Branch/Commit ID: 38f5f9618ce651ac9533b4ee09bda6fb0a2dc795
workflow graph oxog_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 96324c1392b6b774498e415346956e77e5d8dd86
workflow graph oxog_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009
workflow graph Bacterial Annotation (two-pass) pass 1

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass1.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
workflow graph metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/metrics.cwl

Branch/Commit ID: 53fd4d4c05891c7c8b5cd6a5a8179a08c2e585c9
workflow graph Dockstore.cwl

INTEGRATE workflow: untar, tophat align, samtools index, Integrate fusion

 https://github.com/Jeltje/integrate.git

Path: Dockstore.cwl

Branch/Commit ID: d30bfc8382d2e5d3842523ef5410d6c915940b4b
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: f736cf8f663fbba8f1b4158431f2b6a6d88491b4