Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 05-quantification-with-control.cwl

ChIP-seq - Quantification - samples: treatment and control

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl

Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
workflow graph cram_to_bam workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph CLE gold vcf evaluation workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/vcf_eval_cle_gold.cwl

Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
workflow graph workflow.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_md5checksums/workflow.cwl

Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
workflow graph FASTQ to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
workflow graph cache_test_workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/cache_test_workflow.cwl

Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489