Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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RNA-seq (VCF) alelle specific pipeline for paired-end data
Allele specific RNA-Seq (using vcf) paired-end workflow |
https://github.com/datirium/workflows.git
Path: workflows/allele-vcf-rnaseq-pe.cwl Branch/Commit ID: d6f58c383d0676269afb519399061191a1144a6a |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8 |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
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TAP
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https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/tap.prok.workflow.cwl Branch/Commit ID: 735a989b6923e9207baace2702be4554d70c92d7 |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 89098668413e90519c99b35143bffec509d3599c |
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Generate genome index bowtie
Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: 9b4dc225c537685b9c9a32d931d3892d20953dd7 |
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Bisulfite QC tools
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 89098668413e90519c99b35143bffec509d3599c |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8 |
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Chipseq alignment with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
