Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 135976d |
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examplePipeline.cwl
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https://github.com/InsightSoftwareConsortium/GetYourBrainStraight.git
Path: HCK01_2022_Virtual/Tutorials/GetYourBrainPipelined/CWL-Demo/examplePipeline.cwl Branch/Commit ID: main |
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clamr_wf.cwl
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https://github.com/lanl/BEE.git
Path: examples/clamr-ffmpeg-build/clamr_wf.cwl Branch/Commit ID: 3c2491e42c3e980186b6c0942ea2dcaef93a2a0c |
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canine_lancet_module.cwl
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https://github.com/d3b-center/canine-dev.git
Path: subworkflows/canine_lancet_module.cwl Branch/Commit ID: master |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: ec8a7e8 |
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wgs alignment and germline variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: downsample_and_recall |
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sc_atac_seq_prep_process_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: develop |
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qiime2 diversity analyses
Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-06-alpha-beta-diversity.cwl |
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Quality assessment, amplicon classification
Workflow for quality assessment of paired reads and classification using NGTax 2.0. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Export module |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_ngtax.cwl Branch/Commit ID: master |
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md5sum.cwl
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https://github.com/denis-yuen/dockstore-workflow-md5sum-unified.git
Path: md5sum/md5sum.cwl Branch/Commit ID: 1.6.0 |
