Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
vcf_to_aliquot_maf_wf.cwl
|
https://github.com/NCI-GDC/aliquot-maf-cwl.git
Path: vcf-to-aliquot-maf/vcf_to_aliquot_maf_wf.cwl Branch/Commit ID: 0c2847431cc4dc5aae9379ff2bd221ba7d953e03 |
|
|
|
prep.cwl
|
https://git.astron.nl/RD/LINC.git
Path: workflows/linc_target/prep.cwl Branch/Commit ID: 5944b0c7a4fb82f4b3f8df422d6f277777c3828e |
|
|
|
kmer_build_tree
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: test |
|
|
|
gdc_dnaseq_ar_workflow.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: subworkflows/main/gdc_dnaseq_ar_workflow.cwl Branch/Commit ID: 4362aa022f814c89addb876092dce8291b2edc13 |
|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: toil_compatibility |
|
|
|
wgs_variant_calling_bam.cwl
|
https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wgs_variant_calling_bam.cwl Branch/Commit ID: dev |
|
|
|
msi_workflow.cwl
Workflow to run the MSI analysis on a batch of samples |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/msi_workflow.cwl Branch/Commit ID: master |
|
|
|
trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: master |
|
|
|
rRNA annotation workflow with scatter processing
\"This workflow performs rRNA annotation processing for multiple index files using scatter. It executes 4 processes: makeblastdb, blastn alignment, filtering, and rRNA removal for each rRNA index file. related CWL file: ./Tools/09_makeblastdb_rRNA.cwl ./Tools/10_blastn_rRNA_alignment.cwl ./Tools/10_blastn_rRNA_filter1.cwl ./Tools/10_blastn_rRNA_filter2.cwl ./Tools/10_blastn_rRNA_filter3.cwl\" |
https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git
Path: Workflow/blastn_rRNA_ssw.cwl Branch/Commit ID: e062424fbea28f174342f99fd2518237b1d26c32 |
|
|
|
wf_full_IDR_pipeline_2inputs_sample.cwl
This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_2inputs.cwl |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_2inputs_sample.cwl Branch/Commit ID: master |
