Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 6430df56f7345f837d3f9c3f7fb5af5aa9dadc90
workflow graph SARS_psm_workflow.cwl

https://github.com/adamscharlotte/CWL-workflow.git

Path: SARS_psm_workflow.cwl

Branch/Commit ID: af5d00cd0e43fdf914714056a499edf2d61454d4
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: be4060eec958c419c0f559da575533c8e0459ae5
workflow graph fastq2fasta.cwl

https://github.com/arvados/bh20-seq-resource.git

Path: workflows/fastq2fasta/fastq2fasta.cwl

Branch/Commit ID: 30f3f8b0e9efbc954518fc8ea621b53c9591c83a
workflow graph wf_fastqc.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: b4be31e4b809716f65354c0a3d0eff49949eabff
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: caea457b17388fdc5cb088364c194504ae736bdd
workflow graph downsample unaligned BAM and align

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
workflow graph hotspot_vld.cwl

https://github.com/ding-lab/TinDaisy.git

Path: cwl/workflows/hotspot_vld.cwl

Branch/Commit ID: e233d50cbe7d411c01ac4076c2e4ec4d211b9429