Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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cond-wf-002.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-002.cwl Branch/Commit ID: 31ec48a8d81ef7c1b2c5e9c0a19e7623efe4a1e2 |
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Create Genomic Collection for Bacterial Pipeline
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
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scatter-valuefrom-wf3.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf3.cwl Branch/Commit ID: 2256a30d0c1365b30e0a7338fb883c74674fcd25 Packed ID: main |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: 5ef2516220cd2ed327ba7966e7d812de969f4eea |
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main-workflow-pykeen.cwl
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https://github.com/MaastrichtU-IDS/FaVLib.git
Path: workflow/main-workflow-pykeen.cwl Branch/Commit ID: f239080ab539981caa641f60ffe821b33a899d53 |
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fastqtosam_se.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_se.cwl Branch/Commit ID: cf2e9d7c3cc87ce97a1fbf73fad574b170fedcfb |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: 7eef0294395d83ff0765fce61726a59d71126422 |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fasta.workflow.cwl Branch/Commit ID: 2addcde0f4c1c8547f7f3906c2523cded23e9869 |
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indices-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/indices-header.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5 |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
