Explore Workflows

https://github.com/puentesdiaz/workflows.git

Path: workflows/demo.cwl

Branch/Commit ID: master

https://github.com/ncbi/cwl-demos.git

Path: outlier-hit-detection-pipeline/run_workflow_234.cwl

Branch/Commit ID: master

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/leipzig/2020-covid-19-bh.git

Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/paramref_arguments_self.cwl

Branch/Commit ID: 20f01e04328537714e57d136e242d3e7a9d44266

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: toil_compatibility

Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-se-dutp.cwl

Branch/Commit ID: master

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: dev

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-inputs-wf1.cwl

Branch/Commit ID: 551d58d409ef2a0fa2e3ab93b85167dd7d4b1833

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/gathered_downsample_and_recall.cwl

Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3