Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Single-cell Multiome ATAC and RNA-Seq Analyze

Single-cell Multiome ATAC and RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell Multiome ATAC and RNA-Seq datasets.

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-analyze-wf.cwl

Branch/Commit ID: 9064af1cdd8e97bcdf4473e2a741e1ada1a7c4f3
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3
workflow graph chip-seq-alignment.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/chip-seq-alignment.cwl

Branch/Commit ID: 793e327acc1d159ff601043ee88651fca62350dd
workflow graph group-isoforms-batch.cwl

Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.

https://github.com/datirium/workflows.git

Path: tools/group-isoforms-batch.cwl

Branch/Commit ID: c0543fc3f552a521aa498b6597b9a972599de056
workflow graph record-output-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/record-output-wf.cwl

Branch/Commit ID: 5f27e234b4ca88ed1280dedf9e3391a01de12912
workflow graph consensus_maf.cwl

Workflow to merge a large number of maf files into a single consensus maf file for use with GetBaseCountsMultiSample

https://github.com/mskcc/pluto-cwl.git

Path: cwl/consensus_maf.cwl

Branch/Commit ID: 2e1a01a788126f2901ffecc92a48fcbcb81776e1
workflow graph bwa_mem

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl

Branch/Commit ID: a4a3547b9790e99a58424a0dfcb4e467a7691d6a
workflow graph chipseq-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/chipseq-header.cwl

Branch/Commit ID: 2005c6b7f1bff6247d015ff6c116bd9ec97158bb
workflow graph tindaisy-vep_annotate.cwl

https://github.com/ding-lab/TinDaisy.git

Path: cwl/workflows/tindaisy-vep_annotate.cwl

Branch/Commit ID: c81058f1f039446ab10488699675a42129040ecd
workflow graph NonSpliced RNAseq workflow

Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts)

https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl

Branch/Commit ID: b9097b82e6ab6f2c9496013ce4dd6877092956a0