Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	extract_gencoll_ids	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	count-lines6-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/count-lines6-wf.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	directory.cwl Inspect provided directory and return filenames. Generate a new directory and return it (including content).	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/directory.cwl Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403