Explore Workflows
View already parsed workflows here or click here to add your own
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 83ef15482f405bc3d24f88cbf405ceffea9b3023 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: 93c7dee353f887e978ca8c5423a5c975c0796e40 |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: 93c7dee353f887e978ca8c5423a5c975c0796e40 |
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Identifies non-coding RNAs using Rfams covariance models
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: 93c7dee353f887e978ca8c5423a5c975c0796e40 |
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transform_mirna.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/transform_mirna.cwl Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757 |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd |
