Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Immunotherapy Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph Subsample BAM file creating a tagAlign and pseudoreplicates

This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/subample-pseudoreplicates.cwl

Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee
workflow graph Per-region pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
workflow graph Run genomic CMsearch (5S rRNA)

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_noncoding/wf_gcmsearch.cwl

Branch/Commit ID: ba3e313e646f1dd3da3f5f93a1e6cb7f252be97b
workflow graph mergeAndMarkBams_4_1_3.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl

Branch/Commit ID: 1d45492ae0085824a7ac532d0dfa6621c1cbe415
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
workflow graph Run pindel on provided region

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_region.cwl

Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
workflow graph Replace legacy AML Trio Assay

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
workflow graph umi per-lane alignment subworkflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6
workflow graph samtoolsW.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: samtoolsW.cwl

Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7