Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cram_to_bam workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: cram_to_bam/workflow.cwl

Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e
workflow graph readgroup_fastq_pe.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_pe.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: a7d65918c444ee3c99c56bd0f08c2ce670a853ed
workflow graph etl_http.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: c162a19d83f872fe0dc0077e18bef22c99423e4d
workflow graph bam-genomecov-bigwig.cwl

creates genome coverage bigWig file from .bam file

 https://github.com/Barski-lab/ga4gh_challenge.git

Path: workflows/bam-genomecov-bigwig.cwl

Branch/Commit ID: b1c723fe94cda2d19efc7f792970a31413640d59
workflow graph strelka workflow

https://github.com/genome/arvados_trial.git

Path: strelka/workflow.cwl

Branch/Commit ID: 202b43b7449485a317c857d62ca7d39196764e65
workflow graph dummy.cwl

https://github.com/NCBI-Hackathons/Epigenomics_CWL.git

Path: cwl/workflows/dummy.cwl

Branch/Commit ID: 934baaadf133eda785426079d98489307d02f3d7
workflow graph kmer_gc_extract_wnode

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_gc_extract_wnode.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216