Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: e9f3694e31e3c1570183a4f444a44015766f9f2f
workflow graph hi-c-processing-pairs-nore-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nore-nonorm.cwl

Branch/Commit ID: 91d67820264c8ebac829174cb1d0c7c5e30c613f
workflow graph BLAST against rRNA db

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_noncoding/wf_blastn.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
workflow graph kmer_cache_retrieve

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225
workflow graph exomeseq-03-organizedirectories.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-03-organizedirectories.cwl

Branch/Commit ID: 903ac0debdb35062aa655046d5ac99f4417e6da2
workflow graph Seed Search Compartments

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
workflow graph spurious_annot pass2

https://github.com/ncbi-gpipe/pgap.git

Path: spurious_annot/wf_spurious_annot_pass2.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph wf-jointcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: giab-joint/giab-joint-workflow/wf-jointcall.cwl

Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e
workflow graph Filter Protein Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_align_filter.cwl

Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
workflow graph Create Genomic Collection for Bacterial Pipeline

https://github.com/ncbi-gpipe/pgap.git

Path: genomic_source/wf_genomic_source.cwl

Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a