Explore Workflows

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Graph Name Retrieved From View
workflow graph functional analysis prediction with InterProScan

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb
workflow graph contam_euk.cwl

https://github.com/NCBI-Hackathons/ContamFilter.git

Path: cwl/workflow/contam_euk.cwl

Branch/Commit ID: b86d7a9d2181c61064431a8a1bf33e6dfea08378
workflow graph bam-genomecov-bigwig.cwl

creates genome coverage bigWig file from .bam file

 https://github.com/barski-lab/ga4gh_challenge.git

Path: workflows/bam-genomecov-bigwig.cwl

Branch/Commit ID: b1c723fe94cda2d19efc7f792970a31413640d59
workflow graph running cellranger mkfastq and count

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: 18600518ce6539a2e29c1707392a4c5da5687fa3
workflow graph step-valuefrom-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom-wf.cwl

Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3
workflow graph vector_cleanup

This workflow detect and remove vectors from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/vector-cleanup.cwl

Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: 90a321ecf2d049330bcf0657cc4d764d2c3f42dd
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c
workflow graph presto.cwl

https://github.com/eosc-lofar/presto-cwl.git

Path: presto.cwl

Branch/Commit ID: f6661b12c4c28184e826e5e64113e6f04eb8e39c