Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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fastq_clean_pe.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/fastq_clean_pe.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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fastq_clean_se.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/fastq_clean_se.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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bwa_pe.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/bwa_pe.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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qc-basic.workflow.cwl
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https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/qc-basic.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6 |
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Preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6 |
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index sim seq
create sorted / filtered similarity file with feature sequences, and index by md5 |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/index_sim_seq.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6 |
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abundance
abundace profiles from annotated files, for protein and/or rna |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6 |
