Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Metagenomics workflow Workflow pilon assembly polishing Steps: - BBmap (Read mapping to assembly) - Pilon	https://git.wur.nl/unlock/cwl.git Path: cwl/workflows/workflow_pilon_mapping.cwl Branch/Commit ID: 60fafdfbec9b39c860945ef4634e0c28cb5e976c
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 18600518ce6539a2e29c1707392a4c5da5687fa3
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 90a321ecf2d049330bcf0657cc4d764d2c3f42dd
	Filter differentially expressed genes from DESeq for Tag Density Profile Analyses Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses.	https://github.com/datirium/workflows.git Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: 60854b5d299df91e135e05d02f4be61f6a310fbc
	trick_revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/trick_revsort.cwl Branch/Commit ID: aec33fcfa3459a90cbba8c88ebb991be94d21429
	wf_trim_partial_and_map_se_scatter.cwl	https://github.com/yeolab/eclip.git Path: cwl/wf_trim_partial_and_map_se_scatter.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	Filter differentially expressed genes from DESeq for Tag Density Profile Analyses Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses.	https://github.com/datirium/workflows.git Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: 581156366f91861bd4dbb5bcb59f67d468b32af3