Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
|
bacterial_kmer
|
![]() Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a |
|
|
Run pindel on provided region
|
![]() Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
|
|
Detect Variants workflow
|
![]() Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
|
|
scatter GATK HaplotypeCaller over intervals
|
![]() Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a |
|
|
01-qc-pe.cwl
ChIP-seq 01 QC - reads: PE |
![]() Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: 6d9457382f0b7cc2510e148d21383261280d17ed |
|
|
varscan somatic workflow
|
![]() Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
|
|
Filter single sample sv vcf from paired read callers(Manta/Smoove)
|
![]() Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c |
|
|
03-map-pe-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: PE - blacklist removal |
![]() Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
|
|
Unaligned to aligned BAM
|
![]() Path: definitions/subworkflows/align.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
|
|
Apply filters to VCF file
|
![]() Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |