Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/final_filtering.cwl Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4 |
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CNV_pipeline
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/workflow.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f |
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trimmed_fastq
Quality Control and Raw Data trimming |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: c3fd9c28e495c9bb7e3a8db53ed564b18d718b2a |
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cnv_codex
CNV CODEX2 calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f |
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Replace legacy AML Trio Assay
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a |
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samtools_sort
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f |
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bact_get_kmer_reference
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 90a321ecf2d049330bcf0657cc4d764d2c3f42dd |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/final_filtering.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f |