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Graph	Name	Retrieved From	View
	cnv_gridss CNV GRIDSS calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23
	wf_trim_and_map_se_nostats.cwl This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment	https://github.com/YeoLab/eclip.git Path: cwl/wf_trim_and_map_se_nostats.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 8fbfb03088968846bb2c0a79ac50b231b43db64f
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b
	cnv_manta CNV Manta calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 94c97cfc95a5bf102a6f9206e045ea1afb768317
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	bacterial_orthology_cond	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	CODEX analysis pipeline using Cytokit	https://github.com/hubmapconsortium/codex-pipeline.git Path: steps/illumination_first_stitching.cwl Branch/Commit ID: a55bd4705b4d8a22174ae3b52aad34d6f9028feb
	samtools_sort	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4