Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: d07f44fc5c253dc4044d86ea79ac6f9e03c01bfa
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_manta.cwl

Branch/Commit ID: 8ca112300d819e3a24a78483685adc42d6199e46
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: 8ca112300d819e3a24a78483685adc42d6199e46
workflow graph bact_get_kmer_reference

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd
workflow graph wf_get_peaks_chimeric_se.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_chimeric_se.cwl

Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
workflow graph bacterial_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/ometiff_second_stitching.cwl

Branch/Commit ID: d8efe116c9fd79d21646ec215799b52b95dfd709
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
workflow graph Align reference proteins plane complete workflow

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_protein_alignment.cwl

Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
workflow graph taxonomy_check_16S

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: 94c97cfc95a5bf102a6f9206e045ea1afb768317