Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG core analysis
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-core-analysis-v4.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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kmer_build_tree
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 8dcf1cc79ea26e9fec999e77ceae1aebfff2cff6 |
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etl.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/etl.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/baminou/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: ad42ab7a8c7e190d5f8615b52278346262256424 |
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spurious_annot pass2
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https://github.com/ncbi-gpipe/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3 |
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pdf2wordcloud.cwl
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https://github.com/wilke/CWL-Quick-Start.git
Path: CWL/Workflows/pdf2wordcloud.cwl Branch/Commit ID: af44711eef08f6012827314d0d809277283eb799 |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb Packed ID: qiime2-03-dada2.cwl |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: f993cada89d2c6f7480a0d56baa7836a361b1f3a |
