Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc
	bulk scRNA-seq pipeline using Salmon	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: bulk-pipeline.cwl Branch/Commit ID: 1cd32d8549d6c13548c31d9c77739e122cc12836
	import_schema-def.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/import_schema-def.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	alignment for mouse with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs_mouse.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 001fab592188cb525afa1c4db6226b833faec106
	collect_bam_stats_workflow.cwl	https://github.com/rdocking/sgseq_cwl.git Path: cwl/collect_bam_stats_workflow.cwl Branch/Commit ID: d3200b13b5e17f39128cae27a5a1a62964136897
	tt_hmmsearch_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 3384fa5776c183d33bef830696b6edc6ec55a292
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0