Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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CLE gold vcf evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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main-wes_chr21_test.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-arvados/main-wes_chr21_test.cwl Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac |
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tmb_workflow.cwl
Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb_workflow.cwl Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4 |
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tt_kmer_compare_wnode
Pairwise comparison |
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 94c97cfc95a5bf102a6f9206e045ea1afb768317 |
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Chipseq alignment with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: e3f18c61d1bbf65e40921dbd044369da4523ee3e |
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DiffBind - Differential Binding Analysis of ChIP-Seq Peak Data
Differential Binding Analysis of ChIP-Seq Peak Data --------------------------------------------------- DiffBind processes ChIP-Seq data enriched for genomic loci where specific protein/DNA binding occurs, including peak sets identified by ChIP-Seq peak callers and aligned sequence read datasets. It is designed to work with multiple peak sets simultaneously, representing different ChIP experiments (antibodies, transcription factor and/or histone marks, experimental conditions, replicates) as well as managing the results of multiple peak callers. For more information please refer to: ------------------------------------- Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, Ali HR, Dunning MJ, Brown GD, Gojis O, Ellis IO, Green AR, Ali S, Chin S, Palmieri C, Caldas C, Carroll JS (2012). “Differential oestrogen receptor binding is associated with clinical outcome in breast cancer.” Nature, 481, -4. |
https://github.com/datirium/workflows.git
Path: workflows/diffbind.cwl Branch/Commit ID: 104059e07a2964673e21d371763e33c0afeb2d03 |
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HBA_target.cwl
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https://git.astron.nl/eosc/prefactor3-cwl.git
Path: workflows/HBA_target.cwl Branch/Commit ID: 6633c39d59a81b9ebf8312450bf50d6a0fe66efa |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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CNV_FPS
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/workflow.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23 |