Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4 |
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wf_full_IDR_pipeline_2inputs.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_2inputs.cwl Branch/Commit ID: aedc0a14d4ba109ee65678a3201a52c5bb6ad473 |
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createindex.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/createindex.cwl Branch/Commit ID: 32d58ceccee0725981d73e1572e2f411acbb7dd8 |
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04-quantification-pe-revstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134 |
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Unaligned bam to sorted, markduped bam
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
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cache_asnb_entries
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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Creates FASTA file from BED coordinates
This workflow creates FASTA file from BED coordinates |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: dde32ff6c8e653a4e6b93316f28737706d5ec367 |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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Replace legacy AML Trio Assay
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595 |
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fail-wf.cwl
Run failtool which will fail |
https://github.com/Duke-GCB/calrissian.git
Path: input-data/fail-wf.cwl Branch/Commit ID: 68362997c0f3d73dc753f08696148d1c5de70017 |
