Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
helloworld-htcondorcern.cwl
|
https://github.com/reanahub/reana-demo-helloworld.git
Path: workflow/cwl/helloworld-htcondorcern.cwl Branch/Commit ID: 0fc7939aca1c3dd336abe5886d40b07bf8a7b329 |
||
kmer_cache_store
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 4f4448f71645275db5b84eb551990dfe3bf37cbb |
||
worldpopulation.cwl
|
https://github.com/reanahub/reana-demo-worldpopulation.git
Path: workflow/cwl/worldpopulation.cwl Branch/Commit ID: b5cbebcc97f2c71396203257ba98deb01de59697 |
||
bam to trimmed fastqs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
||
wf_rescue_ratio_1input.cwl
Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_rescue_ratio_1input.cwl Branch/Commit ID: aedc0a14d4ba109ee65678a3201a52c5bb6ad473 |
||
super-enhancer.cwl
Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl) |
https://github.com/Barski-lab/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1 |
||
pipeline-pe.cwl
ATAC-seq pipeline - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-pe.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134 |
||
adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
||
scatter2.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter2.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894 |
||
helloworld-slurmcern.cwl
|
https://github.com/reanahub/reana-demo-helloworld.git
Path: workflow/cwl/helloworld-slurmcern.cwl Branch/Commit ID: 0fc7939aca1c3dd336abe5886d40b07bf8a7b329 |