Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph maw_single.cwl

https://github.com/zmahnoor14/MAW.git

Path: cwl/maw_single.cwl

Branch/Commit ID: a8b2df3f3918ee400b236c49b34092959293b41b
workflow graph phase VCF

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: low-vaf
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph QIIME2 Step 3

QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step3-alpha-analysis.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: main
workflow graph Variant calling workflow for given interval

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl

Branch/Commit ID: main
workflow graph js-expr-req-wf.cwl#wf

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/js-expr-req-wf.cwl

Branch/Commit ID: master

Packed ID: wf
workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 1af8809
workflow graph Assess the statistical description of calibration events

When DPPS receives a new DL0 data product, the CalibPipe is triggered to process the calibration events. The CalibPipe performs charge integration and peak time extraction for the entire set of calibration events, and computes aggregated time-series statistics, including the mean, median, and standard deviation. Using these aggregated statistics, the CalibPipe identifies faulty camera pixels, such as those affected by starlight, by applying various outlier detection criteria. Time periods with a significant number of faulty pixels, exceeding a predefined threshold, are flagged as invalid. A refined treatment can then be applied to these time periods to account for the issues.

https://gitlab.cta-observatory.org/cta-computing/dpps/calibrationpipeline/calibpipe.git

Path: workflows/telescope/camera/uc-120-2.21-assess-statistical-description.cwl

Branch/Commit ID: rc-1.0
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/ometiff_second_stitching.cwl

Branch/Commit ID: no-gpu-for-cwl-vis-only
workflow graph Exome QC workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: master