Explore Workflows
View already parsed workflows here or click here to add your own
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hello_world_checker.cwl
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Path: hello_world_checker.cwl Branch/Commit ID: 1.03 |
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batch-preprocess-ont.cwl
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Path: PreProcessing/batch-preprocess-ont.cwl Branch/Commit ID: preprocessing |
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main-vg.cwl
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Path: workflows/variant-calling/main-vg.cwl Branch/Commit ID: main |
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collate_unique_rRNA_headers.cwl
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Path: tools/collate_unique_rRNA_headers.cwl Branch/Commit ID: 0fed1c9 |
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qa_check_subwf.cwl
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs |
Path: qa_check_subwf.cwl Branch/Commit ID: develop |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: master |
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sc_atac_seq_prep_process_analyze.cwl
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Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: 7fed36f |
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preprocess.cwl
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Path: cwl/preprocessing/preprocess.cwl Branch/Commit ID: cwl |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
Path: pcawg_minibam_wf.cwl Branch/Commit ID: 1.0.0 |
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mutect panel-of-normals workflow
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Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: downsample_and_recall |
