Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: master |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: master |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: No_filters_detect_variants |
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count-lines8-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: 4bf61c8a3d519eefd8b9271af73974bec62535ba |
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Vcf concordance evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: master |
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ST520104.cwl
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https://github.com/Marco-Salvi/cwl-test.git
Path: wf5201/ST520104.cwl Branch/Commit ID: main |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 3f85843 |
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vecscreen_and_filter_workflow.cwl
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https://github.com/sapojnik/av_screen_x.git
Path: progs/vecscreen_and_filter_workflow.cwl Branch/Commit ID: main |
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qiime2 demux paired sequences
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https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-02-demux-emp-paired.cwl Branch/Commit ID: develop |
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ST520114.cwl
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https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520114.cwl Branch/Commit ID: main |
