Explore Workflows
View already parsed workflows here or click here to add your own
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tt_fscr_calls_pass1
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![]() Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 1c1f5aa0b0dfe5b07beb8ccb0c0e3c073a9fb592 |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
![]() Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 4360fb2e778ecee42e5f78f83b78c65ab3a2b1df |
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ani_top_n
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![]() Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955 |
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workflow.cwl
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![]() Path: flow_dispatch/workflow.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945 |
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wf_run_use_case.cwl
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![]() Path: simple_use_case/cwl/wf_run_use_case.cwl Branch/Commit ID: d744f2f967b26b6b34e029f0de57385ec6cc7d74 |
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SPRM pipeline
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![]() Path: pipeline.cwl Branch/Commit ID: f5aea8e7388cefd7c54b65ae8ce8279440256a95 |
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
![]() Path: workflows/bismark-index.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5 |
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workflow.cwl
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![]() Path: flow_download/workflow.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945 |
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msi_workflow.cwl
Workflow to run the MSI analysis on a batch of samples and merge the results back into a single data clinical file |
![]() Path: cwl/msi_workflow.cwl Branch/Commit ID: d8a8af9fdb69c0a4003680c1d3b96f35d5e48f0e |
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kfdrc_alignment_wf.cwl
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![]() Path: workflows/kfdrc_alignment_wf.cwl Branch/Commit ID: f6902dad01403ba2739724c3677007955270c185 |