Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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umi molecular alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/umi_molecular_alignment.cwl Branch/Commit ID: 37a3622d1d03812e4f868b5024c52607696bfb75 |
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ChIPseq_pipeline.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/ChIPseq_pipeline.cwl Branch/Commit ID: 57f0e832ce1488ba0e4c8345554940e7b2472287 |
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etl.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd |
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wf_blastit.cwl
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https://github.com/ncbi/pipelines.git
Path: contam_filter/wf_blastit.cwl Branch/Commit ID: 7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd |
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download_check.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/download_check.cwl Branch/Commit ID: 39ddc4b79dc93076787046f591225dc7ca3100ce |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546 |