Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 485f0be56cea77bff62b797ae7eff422a990a92c |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e |
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env-wf2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf2.cwl Branch/Commit ID: 0b3846fbf866584870a0b1ce902b5574f549dfee |
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count-lines3-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl Branch/Commit ID: 9e7c68c0834645ba53a7e2b5f70d53df9d051c92 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: a6641911a841296c2853a6ddcb2357c0201c6b85 |
