Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c
	extract_readgroup_fastq_se.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl Branch/Commit ID: 6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf
	extract_readgroup_fastq_se.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: de81bd20ce8829ef64146115902a10e4fe7bad0b
	extract_amplicon_kit.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_amplicon_kit.cwl Branch/Commit ID: 6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2
	extract_amplicon_kit.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_amplicon_kit.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2
	sec-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/sec-wf.cwl Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81
	transform.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: 6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf