Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	PGAP Pipeline, simple user input, PGAPX-134 PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)	https://github.com/ncbi/pgap.git Path: pgap.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757
	transform.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/validate/transform.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
	rna annotation RNAs - predict, cluster, identify, annotate	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: 8698ae242c1f7addf0003663192bb43d7cd36d09
	ensembl_genomes_to_variation_graph_with_uniprot_annotation_virtuoso.cwl	https://github.com/vgteam/Veguns.git Path: ensembl_genomes_to_variation_graph_with_uniprot_annotation_virtuoso.cwl Branch/Commit ID: 76103523276637b2648ba34ac0834abfa22bed83
	abundance abundace profiles from annotated files, for protein and/or rna	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/abundance-clca.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 0fae6bb8a15c634b054ec747e31bdfbc67954c92
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd