Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: 27aa22e6f5d2fca75abca42d52867259fd0725b9
workflow graph xenbase-rnaseq-pe.cwl

XenBase workflow for analysing RNA-Seq paired-end data

https://github.com/datirium/workflows.git

Path: workflows/xenbase-rnaseq-pe.cwl

Branch/Commit ID: 94471ee6c01b7bc17102e45e56e7366c2a52acdf
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2
workflow graph qc-merge-and-hotspots.cwl

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/tools/roslin-qc/qc-merge-and-hotspots.cwl

Branch/Commit ID: bf7303dd44d7f0ec3d3cd2e0829e28a78bd941e2
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: e2ec740fccc81ff7071dcd607c5c158fbc0dfb90
workflow graph Resolve duplicate/overlapping calls in the gVCFs in a named list

https://github.com/curoverse/l7g.git

Path: cwl-version/clean/cwl/tiling_clean_gvcf_named.cwl

Branch/Commit ID: 7e3bca17f8c4349357c6d01cae54e27047ff9e7d
workflow graph bam-bedgraph-bigwig.cwl

Workflow converts input BAM file into bigWig and bedGraph files

https://github.com/datirium/workflows.git

Path: subworkflows/bam-bedgraph-bigwig.cwl

Branch/Commit ID: 6e09b4bf1ff0eb3dd1294f5578624c5a2a2b0b37
workflow graph step-valuefrom3-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl

Branch/Commit ID: e2ec740fccc81ff7071dcd607c5c158fbc0dfb90
workflow graph scatter-valuefrom-wf2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf2.cwl

Branch/Commit ID: e2ec740fccc81ff7071dcd607c5c158fbc0dfb90
workflow graph snpeff-workflow.cwl

Annotate variants provided in a VCF using SnpEff

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: tools/snpeff-workflow.cwl

Branch/Commit ID: 682ec407000059b7f397e5faaeff1317af1d9402