Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Hello World Puts a message into a file using echo	https://github.com/common-workflow-language/workflows.git Path: workflows/hello/hello-param.cwl Branch/Commit ID: 933bf2a1a1cce32d88f88f136275535da9df0954 Packed ID: main
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	alignment workflow	https://github.com/griffithlab/pmbio.org.git Path: assets/CWL/workflow.cwl Branch/Commit ID: 27f6d5be0a4110be1f194439163284fe08542ea6
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4