Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph retrieve metadata from Zenodo community

For a given Zenodo community, retrieve its repository records as Zenodo JSON and (eventually) schema.org JSON-LD and DataCite v4 XML.

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-records.cwl

Branch/Commit ID: 4c0d2b8050f661e2b778d2723bd7b65acd64cb84
workflow graph bam_readcount workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_readcount.cwl

Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: d9ec78aa015755d07a1c60a9d11f1f5f0a012e1f
workflow graph gcaccess_from_list

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: 001fab592188cb525afa1c4db6226b833faec106
workflow graph bam_readcount workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_readcount.cwl

Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223
workflow graph kfdrc_process_bam.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_bam.cwl

Branch/Commit ID: f656d2d32200bee9d3b001af03d5c8b3d5fcb3a7
workflow graph md5-validate.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/md5-validate.cwl

Branch/Commit ID: 895a101d06c26f8c7f8a63545b2b74921b5f7526
workflow graph FASTQ to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8
workflow graph count-lines5-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c