Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph gp_makeblastdb

https://github.com/ncbi-gpipe/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-lowfreq/pisces-ras-workflow/wf-variantcall.cwl

Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e
workflow graph default-dir5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-dir5.cwl

Branch/Commit ID: 886a6ac41c685f20d39e352f9c657e59f3312265
workflow graph Filter Protein Seeds I; Find ProSplign Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_compart_filter_prosplign.cwl

Branch/Commit ID: 8dcf1cc79ea26e9fec999e77ceae1aebfff2cff6
workflow graph Filter Protein Seeds I; Find ProSplign Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_compart_filter_prosplign.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph Filter Protein Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_align_filter.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph pack.cwl

create textures and pack them to be a stellaris mod

 https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: pack.cwl

Branch/Commit ID: 82d204d9e7165d3183b67e19f2d17934d09d8925
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 930a2cf6fff820c2461b42dd79d71d9379343013
workflow graph Seed Search Compartments

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: e9f3694e31e3c1570183a4f444a44015766f9f2f