Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subsample BAM file creating a tagAlign and pseudoreplicates This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: dde32ff6c8e653a4e6b93316f28737706d5ec367
	kmer_cache_retrieve	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
	align_merge_sas	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc
	filter-pcr-artifacts.cwl DNase-seq - map - Filter PCR Artifacts	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
	02-trim-pe.cwl ATAC-seq 02 trimming - reads: PE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 487af88ef0b971f76ecd1a215639bb47e3ee94e1
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc