Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad |
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AltAnalyze Prepare Genome
Devel version of AltAnalyze Prepare Genome ========================================== hg38 is not supported. Use hardcoded EnsMart72 until AltAnalyze starts support more recent Ensembl releases. |
https://github.com/datirium/workflows.git
Path: workflows/altanalyze-prepare-genome.cwl Branch/Commit ID: 57437c1e9f881411b65f79acd64b7cf14df5b901 |
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05-quantification-with-control.cwl
ChIP-seq - Quantification - samples: treatment and control |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134 |
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mutect parallel workflow
|
https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5 |
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Example of setting up a simulation system
Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI). |
https://github.com/bioexcel/biobb_wf_cwl_tutorial.git
Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl Branch/Commit ID: ede6801ecf5ab5f680a429722ec3aa450f96a6e9 |
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cache_asnb_entries
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4 |
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02-trim-pe.cwl
RNA-seq 02 trimming - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134 |
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Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
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align_merge_sas
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334 |
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qc_generator
|
https://github.com/msk-access/qc_generation.git
Path: access_qc__packed.cwl Branch/Commit ID: 248e7c3edaff48e1b97a7931d66aa3b23ce97f54 Packed ID: qc_generator.cwl |