Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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bams2gvcf.wBQSR.multisamples.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.wBQSR.multisamples.cwl Branch/Commit ID: a1c9cd63c80122d6a831059cdb73ec9a9455af6f |
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WGS QC workflow mouse
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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fp_filter workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: fp_filter/workflow.cwl Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a |
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Alignment without BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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Running cellranger count and lineage inference
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416 |
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bgzip and index VCF
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
