Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	phase VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	kmer_top_n	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: a539d600357a48a558daf43fc41a89aae79f9e86
	step-valuefrom4-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/step-valuefrom4-wf.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad