Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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LSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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canine_bcftools_annotate_module.cwl
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https://github.com/d3b-center/canine-dev.git
Path: subworkflows/canine_bcftools_annotate_module.cwl Branch/Commit ID: master |
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tindaisy-postcall.cwl
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https://github.com/ding-lab/TinDaisy.git
Path: cwl/workflows/tindaisy-postcall.cwl Branch/Commit ID: 116b7dd55dce03b617bcde30d992b38b2fb919eb |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 681555881cbdf95a1f4c29f6dc272eb6ca8e4d60 |
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gsnap_multilib_start_with_trimmed.cwl
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https://github.com/CompEpigen/PipelineOlympics.git
Path: CWL/workflows/GSNAP/gsnap_multilib_start_with_trimmed.cwl Branch/Commit ID: main |
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rRNA annotation workflow with scatter processing
\"This workflow performs rRNA annotation processing for multiple index files using scatter. It executes 4 processes: makeblastdb, blastn alignment, filtering, and rRNA removal for each rRNA index file. related CWL file: ./Tools/09_makeblastdb_rRNA.cwl ./Tools/10_blastn_rRNA_alignment.cwl ./Tools/10_blastn_rRNA_filter1.cwl ./Tools/10_blastn_rRNA_filter2.cwl ./Tools/10_blastn_rRNA_filter3.cwl\" |
https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git
Path: Workflow/blastn_rRNA_ssw.cwl Branch/Commit ID: main |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: master |
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cram_to_bam workflow
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https://github.com/markrobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: workflow.cwl |
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steps.cwl
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https://github.com/DimitraPanou/scRNAseq-cwl.git
Path: steps.cwl Branch/Commit ID: 4e9c15b |
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Single-cell RNA-Seq Aggregate
Single-cell RNA-Seq Aggregate Aggregates gene expression data from multiple Single-cell RNA-Seq Alignment experiments. |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-rna-aggregate-wf.cwl Branch/Commit ID: main |
