Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph chksum_for_a_corrupted_xam_file.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_a_corrupted_xam_file.cwl

Branch/Commit ID: 084ba4ee91af7bc98abbc6e13c3937cb87f932ae
workflow graph 04-quantification-pe-revstranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl

Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: be465ad19b07378f3f863f2c4e0019b420c859f2
workflow graph Varscan Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
workflow graph pcr-bottleneck-coef.cwl

ChIP-seq - map - PCR Bottleneck Coefficients

 https://github.com/duke-gcb/ggr-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: 6d9457382f0b7cc2510e148d21383261280d17ed
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a