Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
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fp_filter workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: fp_filter/workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: e8b3565a008d95859fc44227987a54e6a53a8c29 |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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bgzip and index VCF
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |