Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236 |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: 4df56e95e6fceab69e677b539f3532cbf5946197 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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heatmap.cwl
Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension |
https://github.com/Barski-lab/workflows.git
Path: workflows/heatmap.cwl Branch/Commit ID: e706ffe742cfdf713c4315ab2fb56d07f7e688cb |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |